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_
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A
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B
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C
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D
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E
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F
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G
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H
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I
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J
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K
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L
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M
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N
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P
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R
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S
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T
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U
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V
_
__add__() (bg.multicolor.Multicolor method)
__eq__() (bg.edge.BGEdge method)
(bg.genome.BGGenome method)
(bg.multicolor.Multicolor method)
(bg.vertices.BGVertex method)
__ge__() (bg.multicolor.Multicolor method)
__getattr__() (bg.vertices.TaggedVertex method)
__gt__() (bg.multicolor.Multicolor method)
__hash__() (bg.genome.BGGenome method)
(bg.vertices.BGVertex method)
__iadd__() (bg.multicolor.Multicolor method)
__init__() (bg.breakpoint_graph.BreakpointGraph method)
(bg.edge.BGEdge method)
(bg.genome.BGGenome method)
(bg.kbreak.KBreak method)
(bg.multicolor.Multicolor method)
(bg.tree.BGTree method)
(bg.vertices.BGVertex method)
(bg.vertices.BlockVertex method)
(bg.vertices.InfinityVertex method)
(bg.vertices.TaggedVertex method)
__isub__() (bg.multicolor.Multicolor method)
__le__() (bg.genome.BGGenome method)
(bg.multicolor.Multicolor method)
__lt__() (bg.genome.BGGenome method)
(bg.multicolor.Multicolor method)
__mul__() (bg.multicolor.Multicolor method)
__ne__() (bg.vertices.BGVertex method)
__str__() (bg.vertices.BGVertex method)
__sub__() (bg.multicolor.Multicolor method)
_BGEdge__vertex_json_id() (bg.edge.BGEdge static method)
_BGTree__get_node_by_name() (bg.tree.BGTree method)
_BGTree__get_v_tree_consistent_leaf_based_hashable_multicolors() (bg.tree.BGTree method)
_BGTree__has_edge() (bg.tree.BGTree method)
_BGTree__has_node() (bg.tree.BGTree method)
_BGTree__update_consistent_multicolors() (bg.tree.BGTree method)
_BGTree__vertex_is_leaf() (bg.tree.BGTree method)
_BreakpointGraph__add_bgedge() (bg.breakpoint_graph.BreakpointGraph method)
_BreakpointGraph__delete_all_bgedges_between_two_vertices() (bg.breakpoint_graph.BreakpointGraph method)
_BreakpointGraph__delete_bgedge() (bg.breakpoint_graph.BreakpointGraph method)
_BreakpointGraph__edges() (bg.breakpoint_graph.BreakpointGraph method)
_BreakpointGraph__edges_between_two_vertices() (bg.breakpoint_graph.BreakpointGraph method)
_BreakpointGraph__get_edge_by_two_vertices() (bg.breakpoint_graph.BreakpointGraph method)
_BreakpointGraph__get_edges_by_vertex() (bg.breakpoint_graph.BreakpointGraph method)
_BreakpointGraph__get_vertex_by_name() (bg.breakpoint_graph.BreakpointGraph method)
_BreakpointGraph__merge_all_bgedges_between_two_vertices() (bg.breakpoint_graph.BreakpointGraph method)
_BreakpointGraph__split_all_edges_between_two_vertices() (bg.breakpoint_graph.BreakpointGraph method)
_BreakpointGraph__split_bgedge() (bg.breakpoint_graph.BreakpointGraph method)
_BreakpointGraph__update() (bg.breakpoint_graph.BreakpointGraph method)
_GRIMMReader__assign_vertex_pair() (bg.grimm.GRIMMReader static method)
_Multicolor__delete() (bg.multicolor.Multicolor method)
_Multicolor__left_merge() (bg.multicolor.Multicolor static method)
_Multicolor__merge() (bg.multicolor.Multicolor class method)
A
add_bgedge() (bg.breakpoint_graph.BreakpointGraph method)
add_edge() (bg.breakpoint_graph.BreakpointGraph method)
(bg.tree.BGTree method)
add_tag() (bg.vertices.TaggedVertex method)
append() (bg.tree.BGTree method)
apply_kbreak() (bg.breakpoint_graph.BreakpointGraph method)
B
bg.breakpoint_graph (module)
bg.distances (module)
bg.edge (module)
bg.genome (module)
bg.grimm (module)
bg.kbreak (module)
bg.multicolor (module)
bg.tree (module)
bg.utils (module)
bg.vertices (module)
BGEdge (class in bg.edge)
BGEdge.BGEdgeJSONSchema (class in bg.edge)
bgedge_is_tree_consistent() (bg.tree.BGTree method)
bgedge_is_vtree_consistent() (bg.tree.BGTree method)
BGGenome (class in bg.genome)
BGGenome.BGGenomeJSONSchema (class in bg.genome)
BGTree (class in bg.tree)
BGVertex (class in bg.vertices)
BGVertex.BGVertexJSONSchema (class in bg.vertices)
BlockVertex (class in bg.vertices)
BlockVertex.BlockVertexJSONSchema (class in bg.vertices)
BreakpointGraph (class in bg.breakpoint_graph)
C
colors (bg.multicolor.Multicolor attribute)
colors_json_ids (bg.edge.BGEdge attribute)
connected_components_subgraphs() (bg.breakpoint_graph.BreakpointGraph method)
D
delete() (bg.multicolor.Multicolor method)
delete_all_edges_between_two_vertices() (bg.breakpoint_graph.BreakpointGraph method)
delete_bgedge() (bg.breakpoint_graph.BreakpointGraph method)
delete_edge() (bg.breakpoint_graph.BreakpointGraph method)
E
edges() (bg.breakpoint_graph.BreakpointGraph method)
(bg.tree.BGTree method)
edges_between_two_vertices() (bg.breakpoint_graph.BreakpointGraph method)
F
from_json() (bg.breakpoint_graph.BreakpointGraph class method)
(bg.edge.BGEdge class method)
(bg.genome.BGGenome class method)
(bg.vertices.BlockVertex class method)
(bg.vertices.InfinityVertex class method)
(bg.vertices.TaggedVertex class method)
G
get_breakpoint_graph() (bg.grimm.GRIMMReader static method)
get_distance() (bg.tree.BGTree method)
get_edge_by_two_vertices() (bg.breakpoint_graph.BreakpointGraph method)
get_edges_by_vertex() (bg.breakpoint_graph.BreakpointGraph method)
get_edges_from_parsed_data() (bg.grimm.GRIMMReader static method)
get_node_by_name() (bg.tree.BGTree method)
get_tree_consistent_multicolors() (bg.tree.BGTree method)
get_vertex_by_name() (bg.breakpoint_graph.BreakpointGraph method)
get_vtree_consistent_multicolors() (bg.tree.BGTree method)
GRIMMReader (class in bg.grimm)
H
has_edge() (bg.tree.BGTree method)
has_node() (bg.tree.BGTree method)
hashable_representation (bg.multicolor.Multicolor attribute)
I
InfinityVertex (class in bg.vertices)
InfinityVertex.InfinityVertexJSONSchema (class in bg.vertices)
intersect() (bg.multicolor.Multicolor method)
is_block_vertex (bg.vertices.BlockVertex attribute)
is_comment_string() (bg.grimm.GRIMMReader static method)
is_genome_declaration_string() (bg.grimm.GRIMMReader static method)
is_infinity_vertex (bg.vertices.InfinityVertex attribute)
is_irregular_vertex (bg.vertices.InfinityVertex attribute)
is_regular_vertex (bg.vertices.BlockVertex attribute)
J
json_id (bg.genome.BGGenome attribute)
json_schema_name (bg.edge.BGEdge attribute)
(bg.genome.BGGenome attribute)
K
KBreak (class in bg.kbreak)
L
left_merge() (bg.multicolor.Multicolor class method)
M
merge() (bg.breakpoint_graph.BreakpointGraph class method)
(bg.edge.BGEdge class method)
(bg.multicolor.Multicolor class method)
merge_all_edges() (bg.breakpoint_graph.BreakpointGraph method)
merge_all_edges_between_two_vertices() (bg.breakpoint_graph.BreakpointGraph method)
Multicolor (class in bg.multicolor)
multicolor_is_tree_consistent() (bg.tree.BGTree method)
multicolor_is_vtree_consistent() (bg.tree.BGTree method)
N
name (bg.vertices.InfinityVertex attribute)
(bg.vertices.TaggedVertex attribute)
nodes() (bg.breakpoint_graph.BreakpointGraph method)
(bg.tree.BGTree method)
P
parse_data_string() (bg.grimm.GRIMMReader static method)
parse_genome_declaration_string() (bg.grimm.GRIMMReader static method)
R
remove_tag() (bg.vertices.TaggedVertex method)
root (bg.tree.BGTree attribute)
S
similarity_score() (bg.multicolor.Multicolor static method)
split_all_edges() (bg.breakpoint_graph.BreakpointGraph method)
split_all_edges_between_two_vertices() (bg.breakpoint_graph.BreakpointGraph method)
split_bgedge() (bg.breakpoint_graph.BreakpointGraph method)
split_colors() (bg.multicolor.Multicolor class method)
split_edge() (bg.breakpoint_graph.BreakpointGraph method)
T
TaggedBlockVertex (class in bg.vertices)
TaggedBlockVertex.TaggedBlockVertexJSONSchema (class in bg.vertices)
TaggedInfinityVertex (class in bg.vertices)
TaggedInfinityVertex.TaggedInfinityVertexJSONSchema (class in bg.vertices)
TaggedVertex (class in bg.vertices)
TaggedVertex.TaggedVertexJSONSchema (class in bg.vertices)
to_json() (bg.breakpoint_graph.BreakpointGraph method)
(bg.edge.BGEdge method)
(bg.genome.BGGenome method)
tree_consistent_multicolors (bg.tree.BGTree attribute)
tree_consistent_multicolors_set (bg.tree.BGTree attribute)
U
update() (bg.breakpoint_graph.BreakpointGraph method)
(bg.multicolor.Multicolor method)
V
valid_kbreak_matchings() (bg.kbreak.KBreak static method)
vertex1_json_id (bg.edge.BGEdge attribute)
vertex2_json_id (bg.edge.BGEdge attribute)
vtree_consistent_multicolors (bg.tree.BGTree attribute)
vtree_consistent_multicolors_set (bg.tree.BGTree attribute)
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