Welcome to bg’s documentation!

BG is a python based package that provides a comprehensive implementation of comparative genomics combinatorial object named breakpoint graph [1].

Code is written with the philosophy of TDD and requires Python v3.3+ for correct work.

The package is created and maintained by Sergey Aganezov, Ph.D. Candidate at the Department of Mathematics & Computational Biology institute (CBI), George Washington University (GWU), Washington, DC, USA.

Author is very grateful for thoughtful and dedicated leadership of Dr. Max A. Alekseyev, Associate Professor at Department of Mathematics & CBI, GWU.

Installation

Package is distributed by pypi online repository of software for the Python programming language.

To install execute the following simple command

>>> pip install bg

Contents:

• Contributing
  • Test Driven Development
  • Issues reporting
  • Code incorporation
• API documentation
  • grimm.py
  • breakpoint_graph.py
  • tree.py
  • kbreak.py
  • multicolor.py
  • edge.py
  • vertices.py
  • genome.py
  • distances.py
  • util.py

Indices and tables

• Index
• Module Index
• Search Page