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1.9.0
Contributing
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A
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B
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C
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D
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E
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F
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G
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H
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I
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J
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K
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L
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M
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N
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P
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R
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S
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T
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V
_
__add__() (bg.multicolor.Multicolor method)
__eq__() (bg.edge.BGEdge method)
(bg.genome.BGGenome method)
(bg.multicolor.Multicolor method)
__ge__() (bg.multicolor.Multicolor method)
__gt__() (bg.multicolor.Multicolor method)
__hash__() (bg.genome.BGGenome method)
__iadd__() (bg.multicolor.Multicolor method)
__init__() (bg.breakpoint_graph.BreakpointGraph method)
(bg.edge.BGEdge method)
(bg.kbreak.KBreak method)
(bg.multicolor.Multicolor method)
__isub__() (bg.multicolor.Multicolor method)
__le__() (bg.genome.BGGenome method)
(bg.multicolor.Multicolor method)
__lt__() (bg.genome.BGGenome method)
(bg.multicolor.Multicolor method)
__mul__() (bg.multicolor.Multicolor method)
__sub__() (bg.multicolor.Multicolor method)
_BGEdge__vertex_json_id() (bg.edge.BGEdge static method)
_BGTree__get_node_by_name() (bg.tree.BGTree method)
_BGTree__get_v_tree_consistent_leaf_based_hashable_multicolors() (bg.tree.BGTree method)
_BGTree__has_edge() (bg.tree.BGTree method)
_BGTree__has_node() (bg.tree.BGTree method)
_BGTree__update_consistent_multicolors() (bg.tree.BGTree method)
_BGTree__vertex_is_leaf() (bg.tree.BGTree method)
_BreakpointGraph__add_bgedge() (bg.breakpoint_graph.BreakpointGraph method)
_BreakpointGraph__delete_all_bgedges_between_two_vertices() (bg.breakpoint_graph.BreakpointGraph method)
_BreakpointGraph__delete_bgedge() (bg.breakpoint_graph.BreakpointGraph method)
_BreakpointGraph__edges() (bg.breakpoint_graph.BreakpointGraph method)
_BreakpointGraph__edges_between_two_vertices() (bg.breakpoint_graph.BreakpointGraph method)
_BreakpointGraph__get_edge_by_two_vertices() (bg.breakpoint_graph.BreakpointGraph method)
_BreakpointGraph__get_edges_by_vertex() (bg.breakpoint_graph.BreakpointGraph method)
_BreakpointGraph__get_vertex_by_name() (bg.breakpoint_graph.BreakpointGraph method)
_BreakpointGraph__merge_all_bgedges_between_two_vertices() (bg.breakpoint_graph.BreakpointGraph method)
_BreakpointGraph__split_all_edges_between_two_vertices() (bg.breakpoint_graph.BreakpointGraph method)
_BreakpointGraph__split_bgedge() (bg.breakpoint_graph.BreakpointGraph method)
_BreakpointGraph__update() (bg.breakpoint_graph.BreakpointGraph method)
_GRIMMReader__assign_vertex_pair() (bg.grimm.GRIMMReader static method)
_Multicolor__delete() (bg.multicolor.Multicolor method)
_Multicolor__left_merge() (bg.multicolor.Multicolor static method)
_Multicolor__merge() (bg.multicolor.Multicolor class method)
A
add_bgedge() (bg.breakpoint_graph.BreakpointGraph method)
add_edge() (bg.breakpoint_graph.BreakpointGraph method)
(bg.tree.BGTree method)
append() (bg.tree.BGTree method)
apply_kbreak() (bg.breakpoint_graph.BreakpointGraph method)
B
bg.breakpoint_graph (module)
bg.distances (module)
bg.edge (module)
bg.genome (module)
bg.grimm (module)
bg.kbreak (module)
bg.multicolor (module)
bg.tree (module)
bg.utils (module)
bg.vertices (module)
BGEdge (class in bg.edge)
BGEdge.BGEdgeJSONSchema (class in bg.edge)
bgedge_is_tree_consistent() (bg.tree.BGTree method)
bgedge_is_vtree_consistent() (bg.tree.BGTree method)
BGGenome (class in bg.genome)
BGGenome.BGGenomeJSONSchema (class in bg.genome)
BGTree (class in bg.tree)
BGVertex (class in bg.vertices)
BlockVertex (class in bg.vertices)
BlockVertex.BlockVertexJSONSchema (class in bg.vertices)
BreakpointGraph (class in bg.breakpoint_graph)
C
colors (bg.multicolor.Multicolor attribute)
colors_json_ids (bg.edge.BGEdge attribute)
connected_components_subgraphs() (bg.breakpoint_graph.BreakpointGraph method)
D
delete() (bg.multicolor.Multicolor method)
delete_all_edges_between_two_vertices() (bg.breakpoint_graph.BreakpointGraph method)
delete_bgedge() (bg.breakpoint_graph.BreakpointGraph method)
delete_edge() (bg.breakpoint_graph.BreakpointGraph method)
E
edges() (bg.breakpoint_graph.BreakpointGraph method)
(bg.tree.BGTree method)
edges_between_two_vertices() (bg.breakpoint_graph.BreakpointGraph method)
F
from_json() (bg.breakpoint_graph.BreakpointGraph class method)
(bg.edge.BGEdge class method)
(bg.genome.BGGenome class method)
(bg.vertices.BlockVertex class method)
(bg.vertices.InfinityVertex class method)
G
get_breakpoint_graph() (bg.grimm.GRIMMReader static method)
get_distance() (bg.tree.BGTree method)
get_edge_by_two_vertices() (bg.breakpoint_graph.BreakpointGraph method)
get_edges_by_vertex() (bg.breakpoint_graph.BreakpointGraph method)
get_edges_from_parsed_data() (bg.grimm.GRIMMReader static method)
get_node_by_name() (bg.tree.BGTree method)
get_tree_consistent_multicolors() (bg.tree.BGTree method)
get_vertex_by_name() (bg.breakpoint_graph.BreakpointGraph method)
get_vtree_consistent_multicolors() (bg.tree.BGTree method)
GRIMMReader (class in bg.grimm)
H
has_edge() (bg.tree.BGTree method)
has_node() (bg.tree.BGTree method)
hashable_representation (bg.multicolor.Multicolor attribute)
I
InfinityVertex (class in bg.vertices)
InfinityVertex.InfinityVertexJSONSchema (class in bg.vertices)
intersect() (bg.multicolor.Multicolor method)
is_block_vertex (bg.vertices.BlockVertex attribute)
is_comment_string() (bg.grimm.GRIMMReader static method)
is_genome_declaration_string() (bg.grimm.GRIMMReader static method)
is_infinity_vertex (bg.vertices.InfinityVertex attribute)
is_irregular_vertex (bg.vertices.InfinityVertex attribute)
is_regular_vertex (bg.vertices.BlockVertex attribute)
J
json_id (bg.genome.BGGenome attribute)
json_schema_name (bg.edge.BGEdge attribute)
(bg.genome.BGGenome attribute)
K
KBreak (class in bg.kbreak)
L
left_merge() (bg.multicolor.Multicolor class method)
M
merge() (bg.breakpoint_graph.BreakpointGraph class method)
(bg.edge.BGEdge class method)
(bg.multicolor.Multicolor class method)
merge_all_edges() (bg.breakpoint_graph.BreakpointGraph method)
merge_all_edges_between_two_vertices() (bg.breakpoint_graph.BreakpointGraph method)
Multicolor (class in bg.multicolor)
multicolor_is_tree_consistent() (bg.tree.BGTree method)
multicolor_is_vtree_consistent() (bg.tree.BGTree method)
N
name (bg.vertices.InfinityVertex attribute)
nodes() (bg.breakpoint_graph.BreakpointGraph method)
(bg.tree.BGTree method)
P
parse_data_string() (bg.grimm.GRIMMReader static method)
parse_genome_declaration_string() (bg.grimm.GRIMMReader static method)
R
root (bg.tree.BGTree attribute)
S
similarity_score() (bg.multicolor.Multicolor static method)
split_all_edges() (bg.breakpoint_graph.BreakpointGraph method)
split_all_edges_between_two_vertices() (bg.breakpoint_graph.BreakpointGraph method)
split_bgedge() (bg.breakpoint_graph.BreakpointGraph method)
split_colors() (bg.multicolor.Multicolor class method)
split_edge() (bg.breakpoint_graph.BreakpointGraph method)
T
to_json() (bg.breakpoint_graph.BreakpointGraph method)
(bg.edge.BGEdge method)
(bg.genome.BGGenome method)
tree_consistent_multicolors (bg.tree.BGTree attribute)
tree_consistent_multicolors_set (bg.tree.BGTree attribute)
U
update() (bg.breakpoint_graph.BreakpointGraph method)
(bg.multicolor.Multicolor method)
V
valid_kbreak_matchings() (bg.kbreak.KBreak static method)
vertex1_json_id (bg.edge.BGEdge attribute)
vertex2_json_id (bg.edge.BGEdge attribute)
vtree_consistent_multicolors (bg.tree.BGTree attribute)
vtree_consistent_multicolors_set (bg.tree.BGTree attribute)
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